systemFastqDump: Wrapper for fastq-dump SRA utility

In HenrikBengtsson/aroma.seq: High-Throughput Sequence Analysis using the Aroma Framework

Description

Wrapper for fastq-dump SRA utility.

Usage

## Default S3 method:
systemFastqDump(..., commandName="fastq-dump", Stdout=TRUE, Stderr=FALSE, .fake=FALSE,
  verbose=FALSE)

Arguments

commandName	A character string specifying the FastqDump command.
...	Additional arguments specifying FastqDump command line switches.
system2ArgsList	Named list of arguments to pass to internal system2 call.
.fake	If TRUE, the executable is not called.
verbose	See Verbose.

Author(s)

Taku Tokuyasu

HenrikBengtsson/aroma.seq documentation built on Feb. 15, 2021, 2:21 a.m.