writeFastaReferenceFile.FastaReferenceSet: Writes the content of multiple FASTA files into a new FASTA...

In HenrikBengtsson/aroma.seq: High-Throughput Sequence Analysis using the Aroma Framework

Description

Writes the content of multiple FASTA files into a new FASTA file. Existing files are left unmodified.

Usage

## S3 method for class 'FastaReferenceSet'
writeFastaReferenceFile(this, filename=sprintf("%s,%s.fa", getOrganism(this),
  getChecksum(this)), path=file.path("annotationData", "organisms", getOrganism(this)),
  ..., overwrite=FALSE, verbose=FALSE)

Arguments

filename, path	The filename and path of the generated FastaReferenceFile.
...	Not used.
overwrite	If TRUE and the output file already exists, then it is overwritten, otherwise an exception is thrown.
verbose	See Verbose.

Value

Returns a FastaReferenceFile.

Author(s)

Henrik Bengtsson

HenrikBengtsson/aroma.seq documentation built on Feb. 15, 2021, 2:21 a.m.