R/999.package.R

In HenrikBengtsson/aroma.seq: High-Throughput Sequence Analysis using the Aroma Framework

#########################################################################/**
# @RdocPackage aroma.seq
#
# \description{
#   @eval "getDescription(aroma.seq)"
# }
#
# \section{Requirements}{
#   TBA.
# }
#
# \section{External software requirements}{
#   The following external tools utilized by this package:
#   \itemize{
#     \item bowtie2: \url{http://bowtie-bio.sourceforge.net/bowtie2/}
#     \item BWA: \url{http://bio-bwa.sourceforge.net/}
#     \item samtools: \url{http://samtools.sourceforge.net/}
#   }
#
#   Some of the external tools are available for Windows from [1].
# }
#
# \section{Installation and updates}{
#   TBA.
# }
#
# \section{To get started}{
#   TBA.
# }
#
# \section{How to cite this package}{
#  Bengtsson H et al. (2016).
# \emph{aroma.seq: @eval "getTitle(aroma.seq)"}
# \url{@eval "getUrl(aroma.seq)"}.
# }
#
# \section{License}{
#   The releases of this package is licensed under
#   LGPL version 2.1 or newer.
#
#   The development code of the packages is under a private licence
#   (where applicable) and patches sent to the author fall under the
#   latter license, but will be, if incorporated, released under the
#   "release" license above.
# }
#
# \references{
#   [1] \emph{BOW - Bioinformatics On Windows},
#       \url{http://bow.codeplex.com/}.\cr
# }
#
# @author
#*/#########################################################################