API for MRCIEU/TwoSampleMR
Two Sample MR Functions and Interface to MR Base Database
| Global functions | |
|---|---|
| %>% | Man page |
| .onAttach | Source code |
| Ghuber | Source code |
| Isq | Man page Source code |
| PM | Source code |
| TwoSampleMR | Man page |
| TwoSampleMR-package | Man page |
| add_metadata | Man page Source code |
| add_rsq | Man page Source code |
| add_rsq_one | Source code |
| allele_frequency | Man page Source code |
| available_outcomes | Man page Source code |
| blank_plot | Source code |
| check_palindromic | Source code |
| check_required_columns | Source code |
| check_units | Source code |
| cleanup_outcome_data | Man page Source code |
| clump_data | Man page Source code |
| combine_all_mrresults | Man page Source code |
| combine_data | Man page Source code |
| compareNA | Source code |
| contingency | Man page Source code |
| convert_outcome_to_exposure | Man page Source code |
| create_ids | Source code |
| create_label | Man page Source code |
| dat_to_MRInput | Man page Source code |
| dat_to_RadialMR | Man page Source code |
| default_parameters | Man page Source code |
| directionality_test | Man page Source code |
| effective_n | Man page Source code |
| enrichment | Man page Source code |
| enrichment_method_list | Man page Source code |
| estimate_trait_sd | Man page Source code |
| extract_instruments | Man page Source code |
| extract_outcome_data | Man page Source code |
| extract_outcome_data_internal | Source code |
| fishers_combined_test | Man page Source code |
| flip_alleles | Source code |
| forest_plot | Man page |
| forest_plot_1_to_many | Man page |
| forest_plot_basic | Man page Source code |
| forest_plot_basic2 | Man page Source code |
| format_1_to_many | Man page Source code |
| format_aries_mqtl | Man page Source code |
| format_d | Man page Source code |
| format_data | Man page Source code |
| format_gtex_eqtl | Man page Source code |
| format_gwas_catalog | Man page Source code |
| format_metab_qtls | Man page Source code |
| format_mr_results | Man page Source code |
| format_proteomic_qtls | Man page Source code |
| generate_odds_ratios | Man page Source code |
| get_p_from_r2n | Man page Source code |
| get_population_allele_frequency | Man page Source code |
| get_r_from_bsen | Man page Source code |
| get_r_from_lor | Man page Source code |
| get_r_from_pn | Man page Source code |
| get_r_from_pn_less_accurate | Source code |
| get_rsq | Source code |
| get_se | Man page Source code |
| harmonise | Source code |
| harmonise_11 | Source code |
| harmonise_12 | Source code |
| harmonise_21 | Source code |
| harmonise_22 | Source code |
| harmonise_cleanup_variables | Source code |
| harmonise_data | Man page Source code |
| harmonise_ld_dat | Man page Source code |
| harmonise_make_snp_effects_positive | Source code |
| ids_new_to_old | Source code |
| ids_new_to_old2 | Source code |
| ids_old_to_new | Source code |
| ids_old_to_new2 | Source code |
| knit_report | Man page Source code |
| ld_matrix | Man page Source code |
| ldsc_h2 | Man page Source code |
| ldsc_h2_internal | Man page Source code |
| ldsc_rg | Man page |
| ldsc_rg_internal | Man page Source code |
| linreg | Source code |
| make_dat | Man page Source code |
| mr | Man page Source code |
| mr_all | Source code |
| mr_density_plot | Man page Source code |
| mr_egger_regression | Man page Source code |
| mr_egger_regression_bootstrap | Man page Source code |
| mr_forest_plot | Man page Source code |
| mr_forest_plot_grouped | Man page Source code |
| mr_funnel_plot | Man page Source code |
| mr_heterogeneity | Man page Source code |
| mr_ivw | Man page Source code |
| mr_ivw_fe | Man page Source code |
| mr_ivw_mre | Man page Source code |
| mr_ivw_radial | Man page Source code |
| mr_leaveoneout | Man page Source code |
| mr_leaveoneout_plot | Man page Source code |
| mr_mean | Source code |
| mr_mean_egger | Source code |
| mr_mean_ivw | Source code |
| mr_median | Man page Source code |
| mr_meta_fixed | Man page Source code |
| mr_meta_fixed_simple | Man page Source code |
| mr_meta_random | Man page Source code |
| mr_method_list | Man page Source code |
| mr_mode | Man page Source code |
| mr_mode_broken | Source code |
| mr_moe | Man page Source code |
| mr_moe_single | Source code |
| mr_penalised_weighted_median | Man page Source code |
| mr_pleiotropy_test | Man page Source code |
| mr_raps | Man page Source code |
| mr_report | Man page Source code |
| mr_rucker | Man page Source code |
| mr_rucker_bootstrap | Man page Source code |
| mr_rucker_cooksdistance | Man page Source code |
| mr_rucker_internal | Source code |
| mr_rucker_jackknife | Man page Source code |
| mr_rucker_jackknife_internal | Source code |
| mr_scatter_plot | Man page Source code |
| mr_sign | Man page Source code |
| mr_simple_median | Man page Source code |
| mr_simple_mode | Man page Source code |
| mr_simple_mode_nome | Man page Source code |
| mr_singlesnp | Man page Source code |
| mr_steiger | Man page Source code |
| mr_steiger2 | Man page Source code |
| mr_two_sample_ml | Man page Source code |
| mr_uwr | Man page Source code |
| mr_wald_ratio | Man page Source code |
| mr_weighted_median | Man page Source code |
| mr_weighted_mode | Man page Source code |
| mr_weighted_mode_nome | Man page Source code |
| mr_wrapper | Man page Source code |
| mr_wrapper_single | Source code |
| mv_basic | Man page Source code |
| mv_extract_exposures | Man page Source code |
| mv_extract_exposures_local | Man page Source code |
| mv_harmonise_data | Man page Source code |
| mv_ivw | Man page Source code |
| mv_lasso_feature_selection | Man page Source code |
| mv_multiple | Man page Source code |
| mv_residual | Man page Source code |
| mv_subset | Man page Source code |
| power_prune | Man page Source code |
| random_string | Source code |
| read_exposure_data | Man page Source code |
| read_outcome_data | Man page Source code |
| recode_indels_12 | Source code |
| recode_indels_21 | Source code |
| recode_indels_22 | Source code |
| run_mr_presso | Man page Source code |
| run_mrmix | Man page Source code |
| sanitise_string | Source code |
| simple_cap | Man page Source code |
| size.prune | Man page Source code |
| sort_1_to_many | Man page Source code |
| split_exposure | Man page Source code |
| split_outcome | Man page Source code |
| standardise_units | Man page Source code |
| steiger_filtering | Man page Source code |
| steiger_filtering_internal | Source code |
| steiger_sensitivity | Man page Source code |
| subset_on_method | Man page Source code |
| system_metrics | Source code |
| test_r_from_pn | Source code |
| trim | Man page Source code |
| weighted_median | Man page Source code Source code |
| weighted_median_bootstrap | Man page Source code |
