API for MyersGroup/testisAtlas
testisAtlas: R functions and analysis scripts used in the analysis of testis single cell RNAseq
| Global functions | |
|---|---|
| GO_enrichment | Man page Source code |
| Mode | Man page Source code |
| binned_mean_regprob | Man page Source code |
| clustered_heatmap | Man page Source code |
| compare_factorisations | Man page |
| component_enrichment | Man page |
| computeBits | Source code |
| correlate_regprobs | Man page Source code |
| create_grob_list | Man page |
| dmultinom_v | Man page |
| download_flank_sequences | Man page Source code |
| download_tss | Man page Source code |
| export_FASTA | Man page Source code |
| export_all_pwms | Man page Source code |
| expression_dt | Man page |
| find_motifs_parallel | Man page Source code |
| gene_expression_pseudotime | Man page |
| gene_list | Man page |
| get_component_motifs | Man page Source code |
| get_density | Man page |
| get_top_genes | Man page |
| go_volcano_plot | Man page |
| imputed_vs_raw | Man page |
| information_content | Source code |
| join_lists | Source code |
| load2 | Man page |
| load_component_orderings | Man page |
| load_curve_data | Man page |
| log_colour_scale | Man page |
| manhatten_plot | Man page |
| match_cells2 | Man page |
| mean_prob_bycomp | Man page Source code |
| melt_genes | Man page |
| motifGenes | Source code |
| motif_consensus | Man page Source code |
| plotCellAUC | Man page |
| plot_cell_scores | Man page Source code |
| plot_component_regprobs | Man page Source code |
| plot_enrichment | Source code |
| plot_meanprob_bycomp | Man page Source code |
| plot_motif_matches | Man page Source code |
| plot_pseudotime_expression_panel | Man page |
| princurve_bootstrap | Man page |
| print_loadings_scores | Man page |
| print_pca | Man page Source code |
| print_raw_tsne | Man page Source code |
| print_tsne | Man page |
| ptorder | Man page Source code |
| reverse_normalisation | Man page |
| rotate_SDA | Man page |
| rotate_matrix | Man page Source code |
| rotate_tsne | Man page Source code |
| save2 | Man page |
| sda_predict | Man page |
| sequence_matrix | Man page Source code |
| single_component_enrichment | Man page |
| sort_matrix | Man page |
| split_loadings | Man page Source code |
| ternaryColours | Man page |
| tricolour_tsne | Man page |
