tricolour_tsne: Plot tricolor tSNE
In MyersGroup/testisAtlas: testisAtlas: R functions and analysis scripts used in the analysis of testis single cell RNAseq
Description
Usage
Arguments
Details
Value
Description
Plot tricolor tSNE
Usage
1
2
tricolour_tsne(genes, returndf = F, predict = "SDA",
cell_metadata = cell_data, ptsize = 1.5, jitter = 0.25)
Arguments
genes;
string vector of two or three gene names
returndf;
logical, should the data be returned, or a plot (default)
predict;
which factorisation to use for predicted expression
ptsize;
numeric, size of the points in the plot
jitter;
numeric, how jittered should be points be (to avoid overplotting)
Details
print tsne with ternary colour scheme for expression
Value
The Y matrix from Rtsne output, rotated by angle
MyersGroup/testisAtlas documentation built on Nov. 29, 2020, 9:21 p.m.
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Description Usage Arguments Details Value
Description
Plot tricolor tSNE
Usage
1 2 | tricolour_tsne(genes, returndf = F, predict = "SDA",
cell_metadata = cell_data, ptsize = 1.5, jitter = 0.25)
|
Arguments
genes; |
string vector of two or three gene names |
returndf; |
logical, should the data be returned, or a plot (default) |
predict; |
which factorisation to use for predicted expression |
ptsize; |
numeric, size of the points in the plot |
jitter; |
numeric, how jittered should be points be (to avoid overplotting) |
Details
print tsne with ternary colour scheme for expression
Value
The Y matrix from Rtsne output, rotated by angle
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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