BASiCSSimulate: BASiCS simulation

Description Usage Arguments Details Value References Examples

View source: R/BASiCS-simulate.R

Description

Simulate counts using the BASiCS method.

Usage

1
BASiCSSimulate(params = newBASiCSParams(), verbose = TRUE, ...)

Arguments

params

BASiCSParams object containing simulation parameters.

verbose

logical. Whether to print progress messages

...

any additional parameter settings to override what is provided in params.

Details

This function is just a wrapper around BASiCS_Sim that takes a BASiCSParams, runs the simulation then converts the output to a SingleCellExperiment object. See BASiCS_Sim for more details of how the simulation works.

Value

SingleCellExperiment containing simulated counts

References

Vallejos CA, Marioni JC, Richardson S. BASiCS: Bayesian Analysis of Single-Cell Sequencing data. PLoS Comput. Biol. (2015).

Paper: 10.1371/journal.pcbi.1004333

Code: https://github.com/catavallejos/BASiCS

Examples

1
sim <- BASiCSSimulate()

Oshlack/splatter documentation built on June 27, 2018, 10:09 p.m.