mockEmpiricalSet: Generate set of "empirical" mock data

In Oshlack/splatter: Simple Simulation of Single-cell RNA Sequencing Data

Generate set of "empirical" mock data

Description

Quick function to generate matching mock VCF, bulk expression, and eQTL data, useful for running splatPopEmpiricalMeans

Usage

mockEmpiricalSet(
  n.genes = 20,
  n.snps = 1000,
  n.samples = 10,
  chromosome = 1,
  chr.length = 2e+06,
  seed = NULL
)

Arguments

n.genes	Number of genes in mock eQTL data.
n.snps	Number of SNPs in mock vcf file.
n.samples	Number of samples in mock bulk data.
chromosome	Chromosome name
chr.length	Length of mock chromosome
seed	Optional: seed for random seed

Value

list(gff=mockGFF, vcf=mockVCF, means=mockMEANS, eqtl=mockEQTL)

Examples

empirical <- mockEmpiricalSet()

Oshlack/splatter documentation built on April 27, 2024, 8:20 p.m.