makeOverallPanel: Make overall panel

In Oshlack/splatter: Simple Simulation of Single-cell RNA Sequencing Data

Make overall panel

Description

Combine the plots from compSCEs and diffSCEs into a single panel.

Usage

makeOverallPanel(
  comp,
  diff,
  title = "Overall comparison",
  row.labels = c("Means", "Variance", "Mean-variance relationship", "Library size",
    "Zeros per cell", "Zeros per gene", "Mean-zeros relationship")
)

Arguments

comp	list returned by compareSCEs.
diff	list returned by diffSCEs.
title	title for the panel.
row.labels	vector of labels for each of the seven rows.

Value

Combined panel plot

Examples

sim1 <- splatSimulate(nGenes = 1000, batchCells = 20)
sim2 <- simpleSimulate(nGenes = 1000, nCells = 20)
comparison <- compareSCEs(list(Splat = sim1, Simple = sim2))
difference <- diffSCEs(list(Splat = sim1, Simple = sim2), ref = "Simple")
panel <- makeOverallPanel(comparison, difference)

Oshlack/splatter documentation built on May 8, 2024, 5:33 a.m.