API for Oshlack/splatter
Simple Simulation of Single-cell RNA Sequencing Data

Global functions
BASiCSEstimate Man page Source code
BASiCSEstimate.SCESet Man page Source code
BASiCSEstimate.matrix Man page Source code
BASiCSParams Man page
BASiCSParams-class Man page
BASiCSSimulate Man page Source code
Lun2Params Man page
Lun2Params-class Man page
LunParams Man page
LunParams-class Man page
MFAParams Man page
MFAParams-class Man page
Params Man page
Params-class Man page
PhenoParams Man page
PhenoParams-class Man page
SCDDParams Man page
SCDDParams-class Man page
SimpleParams Man page
SimpleParams-class Man page
SplatParams Man page
SplatParams-class Man page
ZINBParams Man page
ZINBParams-class Man page
addFeatureStats Man page Source code
addGeneLengths Man page Source code
bridge Man page Source code
compareSCEs Man page Source code
diffSCEs Man page Source code
expandParams Man page
expandParams,BASiCSParams-method Man page
expandParams,LunParams-method Man page
expandParams,SplatParams-method Man page
getLNormFactors Man page Source code
getParam Man page
getParam,Params-method Man page
getParams Man page Source code
getPathOrder Man page Source code
listSims Man page Source code
logistic Man page Source code
lun2Estimate Man page Source code
lun2Estimate.SingleCellExperiment Man page Source code
lun2Estimate.matrix Man page Source code
lun2Simulate Man page Source code
lunEstimate Man page Source code
lunEstimate.SingleCellExperiment Man page Source code
lunEstimate.matrix Man page Source code
lunSimulate Man page Source code
makeCompPanel Man page Source code
makeDiffPanel Man page Source code
makeOverallPanel Man page Source code
mfaEstimate Man page Source code
mfaEstimate.SingleCellExperiment Man page Source code
mfaEstimate.matrix Man page Source code
mfaSimulate Man page Source code
newBASiCSParams Man page Source code
newLun2Params Man page Source code
newLunParams Man page Source code
newMFAParams Man page Source code
newParams Man page
newPhenoParams Man page Source code
newSCDDParams Man page Source code
newSimpleParams Man page Source code
newSplatParams Man page Source code
newZINBParams Man page Source code
phenoEstimate Man page Source code
phenoEstimate.SingleCellExperiment Man page Source code
phenoEstimate.matrix Man page Source code
phenoSimulate Man page Source code
rbindMatched Man page Source code
scDDEstimate Man page Source code
scDDEstimate.SingleCellExperiment Man page Source code
scDDEstimate.default Man page Source code
scDDEstimate.matrix Man page Source code
scDDSimulate Man page Source code
setParam Man page
setParam,BASiCSParams-method Man page
setParam,Lun2Params-method Man page
setParam,LunParams-method Man page
setParam,Params-method Man page
setParam,PhenoParams-method Man page
setParam,SCDDParams-method Man page
setParam,SplatParams-method Man page
setParam,ZINBParams-method Man page
setParamUnchecked Man page
setParamUnchecked,Params-method Man page
setParams Man page Source code
setParamsUnchecked Man page Source code
showPP Man page Source code
simpleEstimate Man page Source code
simpleEstimate.SingleCellExperiment Man page Source code
simpleEstimate.matrix Man page Source code
simpleSimulate Man page Source code
splatEstBCV Man page Source code
splatEstDropout Man page Source code
splatEstLib Man page Source code
splatEstMean Man page Source code
splatEstOutlier Man page Source code
splatEstimate Man page Source code
splatEstimate.SingleCellExperiment Man page Source code
splatEstimate.matrix Man page Source code
splatSimBCVMeans Man page Source code
splatSimBatchCellMeans Man page Source code
splatSimBatchEffects Man page Source code
splatSimCellMeans Man page
splatSimDE Man page
splatSimDropout Man page Source code
splatSimGeneMeans Man page Source code
splatSimGroupCellMeans Man page Source code
splatSimGroupDE Man page Source code
splatSimLibSizes Man page Source code
splatSimPathCellMeans Man page Source code
splatSimPathDE Man page Source code
splatSimSingleCellMeans Man page Source code
splatSimTrueCounts Man page Source code
splatSimulate Man page Source code
splatSimulateGroups Man page Source code
splatSimulatePaths Man page Source code
splatSimulateSingle Man page Source code
splatter Man page
splatter-package Man page
summariseDiff Man page Source code
winsorize Man page Source code
zinbEstimate Man page Source code
zinbEstimate.SingleCellExperiment Man page Source code
zinbEstimate.matrix Man page Source code
zinbSimulate Man page Source code
Oshlack/splatter documentation built on Oct. 18, 2017, 7:09 p.m.