splatPopConditionalEffects: Add conditional DE effects to means matrix
In Oshlack/splatter: Simple Simulation of Single-cell RNA Sequencing Data
View source: R/splatPop-simulate.R
splatPopConditionalEffects R Documentation
Add conditional DE effects to means matrix
Description
Add conditional DE effects to means matrix
Usage
splatPopConditionalEffects(id, key, vcf, means.pop)
Arguments
id
The group ID (e.g. "global" or "g1")
key
Partial splatPop key data.frame.
vcf
VariantAnnotation object containing genotypes of samples.
means.pop
Population mean gene expression matrix
Value
data.frame of gene mean expression levels WITH eQTL effects.
Oshlack/splatter documentation built on Dec. 10, 2024, 3:48 p.m.
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View source: R/splatPop-simulate.R
| splatPopConditionalEffects | R Documentation |
Add conditional DE effects to means matrix
Description
Add conditional DE effects to means matrix
Usage
splatPopConditionalEffects(id, key, vcf, means.pop)
Arguments
id |
The group ID (e.g. "global" or "g1") |
key |
Partial splatPop key data.frame. |
vcf |
VariantAnnotation object containing genotypes of samples. |
means.pop |
Population mean gene expression matrix |
Value
data.frame of gene mean expression levels WITH eQTL effects.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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