mockVCF: Generate mock vcf

In Oshlack/splatter: Simple Simulation of Single-cell RNA Sequencing Data

Generate mock vcf

Description

Quick function to generate mock vcf file. Note this data has unrealistic population structure.

Usage

mockVCF(
  n.snps = 200,
  n.samples = 5,
  chromosome = 1,
  chr.length = 2e+06,
  seed = NULL
)

Arguments

n.snps	Number of SNPs in mock vcf file.
n.samples	Number of samples in mock bulk data.
chromosome	Chromosome name
chr.length	Length of mock chromosome
seed	Optional: seed for random seed

Value

data.frame containing mock vcf data.

Examples

vcf <- mockVCF()

Oshlack/splatter documentation built on April 27, 2024, 8:20 p.m.