Files in Oshlack/splatter
Simple Simulation of Single-cell RNA Sequencing Data

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md R/AllClasses.R R/AllGenerics.R R/BASiCS-estimate.R R/BASiCS-simulate.R R/BASiCSParams-methods.R R/Lun2Params-methods.R R/LunParams-methods.R R/MFAParams-methods.R R/Params-methods.R R/PhenoParams-methods.R R/SCDDParams-methods.R R/SCE-functions.R R/SimpleParams-methods.R R/SplatParams-methods.R R/ZINBParams-methods.R R/compare.R R/listSims.R R/lun-estimate.R R/lun-simulate.R R/lun2-estimate.R R/lun2-simulate.R R/mfa-estimate.R R/mfa-simulate.R R/params-functions.R R/pheno-estimate.R R/pheno-simulate.R R/scDD-estimate.R R/scDD-simulate.R R/simple-estimate.R R/simple-simulate.R R/splat-estimate.R R/splat-simulate.R R/splatter-package.R R/utils.R R/zinb-estimate.R R/zinb-simulate.R README.md
_pkgdown.yml
appveyor.yml
codecov.yml
docs/LICENSE.html
docs/articles/index.html
docs/articles/splatter-logo-small.png
docs/articles/splatter.html
docs/articles/splatter_files/figure-html/batch-groups-1.png
docs/articles/splatter_files/figure-html/batches-1.png
docs/articles/splatter_files/figure-html/comparison-libsize-features-1.png
docs/articles/splatter_files/figure-html/comparison-means-1.png
docs/articles/splatter_files/figure-html/difference-1.png
docs/articles/splatter_files/figure-html/difference-qq-1.png
docs/articles/splatter_files/figure-html/groups-1.png
docs/articles/splatter_files/figure-html/paths-1.png
docs/articles/splatter_files/figure-html/pca-1.png
docs/authors.html
docs/extra.css
docs/index.html
docs/jquery.sticky-kit.min.js
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/BASiCSEstimate.html
docs/reference/BASiCSParams.html
docs/reference/BASiCSSimulate.html
docs/reference/Lun2Params.html
docs/reference/LunParams.html
docs/reference/MFAParams.html
docs/reference/Params.html
docs/reference/PhenoParams.html
docs/reference/SCDDParams.html
docs/reference/SimpleParams.html
docs/reference/SplatParams.html
docs/reference/ZINBParams.html
docs/reference/addFeatureStats.html
docs/reference/addGeneLengths.html
docs/reference/bridge.html
docs/reference/compareSCESets.html
docs/reference/compareSCEs.html
docs/reference/diffSCESets.html
docs/reference/diffSCEs.html
docs/reference/expandParams.html
docs/reference/getLNormFactors.html
docs/reference/getParam.html
docs/reference/getParams.html
docs/reference/getPathOrder.html
docs/reference/index.html
docs/reference/listSims.html
docs/reference/logistic.html
docs/reference/lun2Estimate.html
docs/reference/lun2Simulate.html
docs/reference/lunEstimate.html
docs/reference/lunSimulate.html
docs/reference/makeCompPanel.html
docs/reference/makeDiffPanel.html
docs/reference/makeOverallPanel.html
docs/reference/mfaEstimate.html
docs/reference/mfaSimulate.html
docs/reference/newParams.html
docs/reference/phenoEstimate.html
docs/reference/phenoSimulate.html
docs/reference/rbindMatched.html
docs/reference/scDDEstimate.html
docs/reference/scDDSimulate.html
docs/reference/setParam.html
docs/reference/setParamUnchecked.html
docs/reference/setParams.html
docs/reference/setParamsUnchecked.html
docs/reference/showPP.html
docs/reference/simpleEstimate.html
docs/reference/simpleSimulate.html
docs/reference/splatEstBCV.html
docs/reference/splatEstDropout.html
docs/reference/splatEstLib.html
docs/reference/splatEstMean.html
docs/reference/splatEstOutlier.html
docs/reference/splatEstimate.html
docs/reference/splatSimBCVMeans.html
docs/reference/splatSimBatchCellMeans.html
docs/reference/splatSimBatchEffects.html
docs/reference/splatSimCellMeans.html
docs/reference/splatSimDE.html
docs/reference/splatSimDropout.html
docs/reference/splatSimGeneMeans.html
docs/reference/splatSimLibSizes.html
docs/reference/splatSimTrueCounts.html
docs/reference/splatSimulate.html
docs/reference/splatter.html
docs/reference/summariseDiff.html
docs/reference/winsorize.html
docs/reference/zinbEstimate.html
docs/reference/zinbSimulate.html
index.md
inst/CITATION
inst/NEWS.Rd
man/BASiCSEstimate.Rd man/BASiCSParams.Rd man/BASiCSSimulate.Rd man/Lun2Params.Rd man/LunParams.Rd man/MFAParams.Rd man/Params.Rd man/PhenoParams.Rd man/SCDDParams.Rd man/SimpleParams.Rd man/SplatParams.Rd man/ZINBParams.Rd man/addFeatureStats.Rd man/addGeneLengths.Rd man/bridge.Rd man/compareSCEs.Rd man/diffSCEs.Rd man/expandParams.Rd man/getLNormFactors.Rd man/getParam.Rd man/getParams.Rd man/getPathOrder.Rd man/listSims.Rd man/logistic.Rd man/lun2Estimate.Rd man/lun2Simulate.Rd man/lunEstimate.Rd man/lunSimulate.Rd man/makeCompPanel.Rd man/makeDiffPanel.Rd man/makeOverallPanel.Rd man/mfaEstimate.Rd man/mfaSimulate.Rd man/newParams.Rd man/phenoEstimate.Rd man/phenoSimulate.Rd man/rbindMatched.Rd man/scDDEstimate.Rd man/scDDSimulate.Rd man/setParam.Rd man/setParamUnchecked.Rd man/setParams.Rd man/setParamsUnchecked.Rd man/showPP.Rd man/simpleEstimate.Rd man/simpleSimulate.Rd man/splatEstBCV.Rd man/splatEstDropout.Rd man/splatEstLib.Rd man/splatEstMean.Rd man/splatEstOutlier.Rd man/splatEstimate.Rd man/splatSimBCVMeans.Rd man/splatSimBatchCellMeans.Rd man/splatSimBatchEffects.Rd man/splatSimCellMeans.Rd man/splatSimDE.Rd man/splatSimDropout.Rd man/splatSimGeneMeans.Rd man/splatSimLibSizes.Rd man/splatSimTrueCounts.Rd man/splatSimulate.Rd man/splatter.Rd man/summariseDiff.Rd man/winsorize.Rd man/zinbEstimate.Rd man/zinbSimulate.Rd
pkgdown/extra.css
tests/testthat.R tests/testthat/test-BASiCSParams.R tests/testthat/test-Lun2Params.R tests/testthat/test-Params.R tests/testthat/test-PhenoParams.R tests/testthat/test-SCDDParams.R tests/testthat/test-SCESet-functions.R tests/testthat/test-SplatParams.R tests/testthat/test-ZINBParams.R tests/testthat/test-lun-simulate.R tests/testthat/test-lun2-simulate.R tests/testthat/test-mfa-simulate.R tests/testthat/test-pheno-simulate.R tests/testthat/test-scDD-simulate.R tests/testthat/test-simple-simulate.R tests/testthat/test-splat-simulate.R tests/testthat/test-zinb-simulate.R
vignettes/splatter-logo-small.png
vignettes/splatter.Rmd
Oshlack/splatter documentation built on Oct. 18, 2017, 7:09 p.m.