splatSimCellMeans: Simulate cell means

In Oshlack/splatter: Simple Simulation of Single-cell RNA Sequencing Data

Simulate cell means

Description

Simulate a gene by cell matrix giving the mean expression for each gene in each cell. Cells start with the mean expression for the group they belong to (when simulating groups) or cells are assigned the mean expression from a random position on the appropriate path (when simulating paths). The selected means are adjusted for each cell's expected library size.

Usage

splatSimSingleCellMeans(sim, params)

splatSimGroupCellMeans(sim, params)

splatSimPathCellMeans(sim, params)

Arguments

sim	SingleCellExperiment to add cell means to.
params	SplatParams object with simulation parameters.

Value

SingleCellExperiment with added cell means.

Oshlack/splatter documentation built on Nov. 15, 2024, 7:25 p.m.