kersplatSelectRegs: Select Kersplat regulators

In Oshlack/splatter: Simple Simulation of Single-cell RNA Sequencing Data

Select Kersplat regulators

Description

Select regulator genes in the gene network for a Kersplat simulation

Usage

kersplatSelectRegs(params, verbose)

Arguments

params	KersplatParams object containing simulation parameters.
verbose	logical. Whether to print progress messages

Details

Regulators are randomly selected, weighted according to the difference between their out degree and in degree. This is an arbitrary weighting and may be improved or replace in the future.

Value

KersplatParams object with gene regulators

Oshlack/splatter documentation built on April 1, 2024, 9:37 a.m.