lunEstimate: Estimate Lun simulation parameters

In Oshlack/splatter: Simple Simulation of Single-cell RNA Sequencing Data

Estimate Lun simulation parameters

Description

Estimate simulation parameters for the Lun simulation from a real dataset.

Usage

lunEstimate(counts, params = newLunParams())

## S3 method for class 'SingleCellExperiment'
lunEstimate(counts, params = newLunParams())

## S3 method for class 'matrix'
lunEstimate(counts, params = newLunParams())

Arguments

counts	either a counts matrix or an SingleCellExperiment object containing count data to estimate parameters from.
params	LunParams object to store estimated values in.

Details

The nGenes and nCells parameters are taken from the size of the input data. No other parameters are estimated. See LunParams for more details on the parameters.

Value

LunParams object containing the estimated parameters.

Examples

# Load example data
library(scuttle)
set.seed(1)
sce <- mockSCE()

params <- lunEstimate(sce)
params

Oshlack/splatter documentation built on April 1, 2024, 9:37 a.m.