setParams: Set parameters

In Oshlack/splatter: Simple Simulation of Single-cell RNA Sequencing Data

Set parameters

Description

Set multiple parameters in a Params object.

Usage

setParams(object, update = NULL, ...)

## S4 method for signature 'KersplatParams'
setParams(object, update = NULL, ...)

## S4 method for signature 'Params'
setParams(object, update = NULL, ...)

## S4 method for signature 'SplatParams'
setParams(object, update = NULL, ...)

Arguments

object	Params object to set parameters in.
update	list of parameters to set where names(update) are the names of the parameters to set and the items in the list are values.
...	additional parameters to set. These are combined with any parameters specified in update.

Details

Each parameter is set by a call to setParam. If the same parameter is specified multiple times it will be set multiple times. Parameters can be specified using a list via update (useful when collecting parameter values in some way) or individually (useful when setting them manually), see examples.

Value

Params object with updated values.

Examples

params <- newSimpleParams()
params
# Set individually
params <- setParams(params, nGenes = 1000, nCells = 50)
params
# Set via update list
params <- setParams(params, list(mean.rate = 0.2, mean.shape = 0.8))
params

Oshlack/splatter documentation built on Nov. 15, 2024, 7:25 p.m.