ZINBParams: The ZINBParams class

In Oshlack/splatter: Simple Simulation of Single-cell RNA Sequencing Data

The ZINBParams class

Description

S4 class that holds parameters for the ZINB-WaVE simulation.

Parameters

The ZINB-WaVE simulation uses the following parameters:

nGenes

The number of genes to simulate.

nCells

The number of cells to simulate.

[seed]

Seed to use for generating random numbers.

model

Object describing a ZINB model.

The majority of the parameters for this simulation are stored in a ZinbModel object. Please refer to the documentation for this class and its constructor(zinbModel) for details about all the parameters.

The parameters not shown in brackets can be estimated from real data using zinbEstimate. For details of the ZINB-WaVE simulation see zinbSimulate.

Oshlack/splatter documentation built on Dec. 10, 2024, 3:48 p.m.