splatEstimate: Estimate Splat simulation parameters

In Oshlack/splatter: Simple Simulation of Single-cell RNA Sequencing Data

Estimate Splat simulation parameters

Description

Estimate simulation parameters for the Splat simulation from a real dataset. See the individual estimation functions for more details on how this is done.

Usage

splatEstimate(counts, params = newSplatParams())

## S3 method for class 'SingleCellExperiment'
splatEstimate(counts, params = newSplatParams())

## S3 method for class 'matrix'
splatEstimate(counts, params = newSplatParams())

Arguments

counts	either a counts matrix or a SingleCellExperiment object containing count data to estimate parameters from.
params	SplatParams object to store estimated values in.

Value

SplatParams object with estimated values.

See Also

splatEstMean, splatEstLib, splatEstOutlier, splatEstBCV, splatEstDropout

Examples

# Load example data
library(scuttle)
set.seed(1)
sce <- mockSCE()

params <- splatEstimate(sce)
params

Oshlack/splatter documentation built on Dec. 10, 2024, 3:48 p.m.