splatEstLib: Estimate Splat library size parameters
In Oshlack/splatter: Simple Simulation of Single-cell RNA Sequencing Data
View source: R/splat-estimate.R
splatEstLib R Documentation
Estimate Splat library size parameters
Description
The Shapiro-Wilks test is used to determine if the library sizes are
normally distributed. If so a normal distribution is fitted to the library
sizes, if not (most cases) a log-normal distribution is fitted and the
estimated parameters are added to the params object. See
fitdist for details on the fitting.
Usage
splatEstLib(counts, params)
Arguments
counts
counts matrix to estimate parameters from.
params
splatParams object to store estimated values in.
Value
SplatParams object with estimated values.
Oshlack/splatter documentation built on Nov. 15, 2024, 7:25 p.m.
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View source: R/splat-estimate.R
| splatEstLib | R Documentation |
Estimate Splat library size parameters
Description
The Shapiro-Wilks test is used to determine if the library sizes are
normally distributed. If so a normal distribution is fitted to the library
sizes, if not (most cases) a log-normal distribution is fitted and the
estimated parameters are added to the params object. See
fitdist for details on the fitting.
Usage
splatEstLib(counts, params)
Arguments
counts |
counts matrix to estimate parameters from. |
params |
splatParams object to store estimated values in. |
Value
SplatParams object with estimated values.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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