splatSimDropout: Simulate dropout
In Oshlack/splatter: Simple Simulation of Single-cell RNA Sequencing Data
View source: R/splat-simulate.R
splatSimDropout R Documentation
Simulate dropout
Description
A logistic function is used to form a relationship between the expression
level of a gene and the probability of dropout, giving a probability for each
gene in each cell. These probabilities are used in a Bernoulli distribution
to decide which counts should be dropped.
Usage
splatSimDropout(sim, params)
Arguments
sim
SingleCellExperiment to add dropout to.
params
SplatParams object with simulation parameters.
Value
SingleCellExperiment with simulated dropout and observed counts.
Oshlack/splatter documentation built on April 1, 2024, 9:37 a.m.
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View source: R/splat-simulate.R
| splatSimDropout | R Documentation |
Simulate dropout
Description
A logistic function is used to form a relationship between the expression level of a gene and the probability of dropout, giving a probability for each gene in each cell. These probabilities are used in a Bernoulli distribution to decide which counts should be dropped.
Usage
splatSimDropout(sim, params)
Arguments
sim |
SingleCellExperiment to add dropout to. |
params |
SplatParams object with simulation parameters. |
Value
SingleCellExperiment with simulated dropout and observed counts.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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