splatPopParseVCF: Format and subset genotype data from a VCF file.
In Oshlack/splatter: Simple Simulation of Single-cell RNA Sequencing Data
View source: R/splatPop-simulate.R
splatPopParseVCF R Documentation
Format and subset genotype data from a VCF file.
Description
Extract numeric alleles from vcf object and filter out SNPs missing genotype
data or outside the Minor Allele Frequency range in 'SplatPopParams'.
Usage
splatPopParseVCF(vcf, params)
Arguments
vcf
VariantAnnotation object containing genotypes of samples.
params
SplatPopParams object containing parameters for population
scale simulations. See SplatPopParams for details.
Value
Genotype data.frame
Oshlack/splatter documentation built on Nov. 15, 2024, 7:25 p.m.
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View source: R/splatPop-simulate.R
| splatPopParseVCF | R Documentation |
Format and subset genotype data from a VCF file.
Description
Extract numeric alleles from vcf object and filter out SNPs missing genotype data or outside the Minor Allele Frequency range in 'SplatPopParams'.
Usage
splatPopParseVCF(vcf, params)
Arguments
vcf |
VariantAnnotation object containing genotypes of samples. |
params |
SplatPopParams object containing parameters for population
scale simulations. See |
Value
Genotype data.frame
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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