summariseDiff: Summarise diffSCEs
In Oshlack/splatter: Simple Simulation of Single-cell RNA Sequencing Data

summariseDiff

R Documentation

Summarise diffSCEs

Description

Summarise the results of diffSCEs. Calculates the Median Absolute Deviation (MAD), Mean Absolute Error (MAE), Root Mean Squared Error (RMSE) and Kolmogorov-Smirnov (KS) statistics for the various properties and ranks them.

Usage

summariseDiff(diff)

Arguments

diff

Output from diffSCEs

Value

data.frame with MADs, MAEs, RMSEs, scaled statistics and ranks

Examples

sim1 <- splatSimulate(nGenes = 1000, batchCells = 20)
sim2 <- simpleSimulate(nGenes = 1000, nCells = 20)
difference <- diffSCEs(list(Splat = sim1, Simple = sim2), ref = "Simple")
summary <- summariseDiff(difference)
head(summary)

Oshlack/splatter documentation built on Dec. 10, 2024, 3:48 p.m.