MyplotEmbedding: function to plot Embedding

In RyanYip-Kat/yipCat: Some function like ArchR style in Seurat Object

Description

function to plot Embedding

Usage

MyplotEmbedding(
  seurat = NULL,
  assay = "RNA",
  embedding = "UMAP",
  colorBy = "metadata",
  name = "Sample",
  imputeWeights = NULL,
  pal = NULL,
  size = 0.1,
  sampleCells = NULL,
  highlightCells = NULL,
  rastr = TRUE,
  quantCut = c(0.01, 0.99),
  discreteSet = NULL,
  continuousSet = NULL,
  randomize = TRUE,
  keepAxis = FALSE,
  baseSize = 10,
  plotAs = NULL,
  labelSize = 0,
  ...
)

Arguments

seurat	an seurat object.
assay	which assay to use.
embedding	which embedding to use plot.
colorBy	'meta.data' or 'matrix'.
name	which column use for color by ,column in 'meta.data' or feature in matrix
imputeWeights	provide imputeWeights ...

RyanYip-Kat/yipCat documentation built on Dec. 18, 2021, 11:55 a.m.