MyplotGroups: function to plot Groups

In RyanYip-Kat/yipCat: Some function like ArchR style in Seurat Object

Description

function to plot Groups

Usage

MyplotGroups(
  seurat = NULL,
  groupBy = "Sample",
  assay = "RNA",
  name = "Krt14",
  maxCells = 1000,
  quantCut = c(0.002, 0.998),
  pal = NULL,
  discreteSet = "stallion",
  ylim = NULL,
  size = 0.5,
  baseSize = 6,
  ratioYX = NULL,
  ridgeScale = 2,
  plotAs = "violin",
  ...
)

Arguments

seurat	an seurat object.
groupBy	which column in 'meta.data' use as group.
assay	which assay to use.
name	which feature in matrix
plotAS	ridges or viloin plot.

RyanYip-Kat/yipCat documentation built on Dec. 18, 2021, 11:55 a.m.