TearsWillFall/variantCall
An implementation of a wrapper for variant calling using MuTECT2 and Platypus GNU/Unix based systems

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Functions
120
Source code
3
Man pages
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TearsWillFall/variantCall: An implementation of a wrapper for variant calling using MuTECT2 and Platypus GNU/Unix based systems
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API

API for TearsWillFall/variantCall
An implementation of a wrapper for variant calling using MuTECT2 and Platypus GNU/Unix based systems

Global functions
%>% Man page
CNNScoreVariants Man page Source code
FilterVariantTranches Man page Source code
annotate_sv_type Man page Source code
bgzip Man page Source code
call_ASEQ Man page Source code
call_HaplotypeCaller Man page Source code
call_bcftools_parallel Man page Source code Source code
call_clonet Man page Source code
call_fings Man page Source code
call_fings_parallel Man page Source code
call_mutect2 Man page Source code
call_mutect2_parallel Man page Source code
call_platypus Man page Source code
call_segments Man page Source code
call_sv_manta Man page Source code
call_sv_manta_parallel Man page Source code
call_sv_svaba Man page Source code
call_sv_svaba_parallel Man page Source code
call_variants Man page Source code
call_variants_strelka Man page Source code
call_variants_strelka_parallel Man page Source code
call_vep Man page Source code
call_vep_maf Man page Source code
check_and_unzip Man page Source code
compress_and_index_vcf Man page Source code
estimate_contamination Man page Source code
estimate_contamination_parallel Man page Source code
filter_VEP Man page Source code
fix_mnps Man page Source code
format_ASEQ_pileup Man page Source code
format_PM_data Man page Source code
format_SNP_data Man page Source code
format_segment_data Man page Source code
generate_CLONET_config Man page Source code
generate_CLONET_sample_info Man page Source code
generate_sets Man page Source code
get_pileup_summary Man page Source code
get_sv_type Man page Source code
learn_orientation Man page Source code
merge_maf Man page Source code
plot_allelic_imbalance Man page Source code
plot_celullarity Man page Source code
plot_cn_calls Man page Source code
plot_evolutionary_distance Man page Source code
process_maf Man page Source code
process_variants Man page Source code
split_vcf Man page Source code
tab_indx Man page Source code
vcf_annotate Man page Source code
vcf_bcftools Man page Source code
vcf_communality Man page Source code
vcf_concatenate Man page Source code
vcf_filter_variants Man page Source code
vcf_filtering Man page Source code
vcf_format Man page Source code
vcf_intersect_bed Man page Source code
vcf_sets Man page Source code
vcf_sort Man page Source code
vcf_stats_merge Man page Source code
TearsWillFall/variantCall documentation built on Oct. 15, 2021, 8:51 p.m.

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