API for Tong-Chen/YSX
For Yishengxin Training
| Global functions | |
|---|---|
| .onAttach | Source code |
| DESeq2_ysx | Man page Source code |
| Matrix2colCorrelation | Man page Source code |
| WGCNA_GeneModuleTraitCoorelation | Man page Source code |
| WGCNA_MEs_traitCorrelationHeatmap | Man page Source code |
| WGCNA_ModuleGeneTraitHeatmap | Man page Source code |
| WGCNA_coexprNetwork | Man page Source code |
| WGCNA_cytoscape | Man page Source code |
| WGCNA_cytoscape_each_module | Man page |
| WGCNA_dataCheck | Man page Source code |
| WGCNA_dataFilter | Man page |
| WGCNA_filterTrait | Man page Source code |
| WGCNA_hubgene | Man page Source code |
| WGCNA_moduleTraitPlot | Man page Source code |
| WGCNA_onestep | Man page Source code |
| WGCNA_readindata | Man page Source code |
| WGCNA_sampleClusterDetectOutlier | Man page Source code |
| WGCNA_saveModuleAndMe | Man page Source code |
| WGCNA_softpower | Man page Source code |
| base_plot_save | Man page Source code |
| checkAndInstallPackages | Man page Source code |
| clusterSampleHeatmap2 | Man page |
| clusterSamplePheatmap | Man page |
| clusterSampleUpperTriPlot | Man page |
| dataFilter | Man page Source code |
| deseq2normalizedExpr | Man page Source code |
| dh | Man page Source code |
| draw_colnames_custom | Man page |
| enrichCustomizedPathway | Man page Source code |
| enrichGO_model | Man page Source code |
| enrichKEGG_model | Man page Source code |
| find_coordinates | Man page Source code |
| flower_plot | Man page Source code |
| flower_plot_inner | Man page Source code |
| generateAbundanceDF | Man page Source code |
| generate_color_list | Man page Source code |
| geom_flat_violin | Source code |
| get_lower_tri | Man page Source code |
| get_matched_columns_based_on_value | Man page Source code |
| get_upper_tri | Man page Source code |
| mixedToFloat | Man page Source code |
| multipleGroupDEgenes | Man page Source code |
| normalizedExpr2DistribBoxplot | Man page Source code |
| numCheck | Man page Source code |
| numPts_below_line | Source code |
| pca_run | Man page Source code |
| rankPlot | Man page Source code |
| readscount2deseq | Man page Source code |
| salmon2deseq | Man page Source code |
| sp.is.null | Man page Source code |
| sp_EulerDiagrams | Man page |
| sp_barplot | Man page |
| sp_boxplot | Man page Source code |
| sp_corrplot | Man page Source code |
| sp_current_time | Man page Source code |
| sp_dendextend | Man page Source code |
| sp_determine_log_add | Man page Source code |
| sp_enrichment | Man page Source code |
| sp_get_ggplot_limits | Man page Source code |
| sp_ggplot_add_vline_hline | Man page Source code |
| sp_ggplot_facet | Man page Source code |
| sp_ggplot_layout | Man page Source code |
| sp_hclust | Man page |
| sp_histogram | Man page Source code |
| sp_lines | Man page Source code Source code |
| sp_load_font | Man page Source code |
| sp_manhattan2_plot | Man page Source code |
| sp_manual_color_ggplot2 | Man page |
| sp_manual_fill_ggplot2 | Man page |
| sp_pca | Man page Source code |
| sp_pcoa | Man page Source code |
| sp_pheatmap | Man page Source code |
| sp_raincloud | Man page |
| sp_readTable | Man page Source code |
| sp_read_in_long_wide_matrix | Man page Source code |
| sp_scatterplot | Man page |
| sp_set_factor_order | Man page Source code |
| sp_string2vector | Man page Source code |
| sp_transfer_one_column | Man page Source code |
| sp_tree_plot | Man page Source code |
| sp_upsetview | Man page |
| sp_vennDiagram | Man page |
| sp_vennDiagram2 | Man page |
| sp_vennDiagram3 | Man page |
| sp_volcano_plot | Man page Source code |
| sp_writeTable | Man page Source code |
| stackVlnPlot | Man page Source code |
| stackVlnSeuratPlot | Man page Source code |
| twoGroupDEgenes | Man page |
| value.identical | Man page Source code |
| volcanoPlot | Man page Source code |
| waterfalls_plot | Man page Source code |
| widedataframe2boxplot | Man page Source code |
