Files in YY-SONG0718/scfindME
This is a package that adaps "scfind", a search tool for single cell RNA-seq data by gene lists, to alternative splicing analysis
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/AllGenerics.R
R/CoreFunctions.R
R/CoreMethods.R
R/Tasic_2016.R
R/ggplot_themes.R
R/zzz.R
README.md
data/Tasic_2016.rda
man/SCFind-class.Rd
man/Tasic_2016.Rd
man/addIndexMeta.Rd
man/buildAltSpliceIndex.Rd
man/cellTypeMarkers.Rd
man/cellTypeNames.Rd
man/evaluateMarkers.Rd
man/findCellTypeSpecificities.Rd
man/findCellTypes.Rd
man/findHouseKeepingNodes.Rd
man/findNodeSets.Rd
man/findNodeSignatures.Rd
man/findSimilarNodes.Rd
man/findTissueSpecificities.Rd
man/geneNodes.Rd
man/get.cell.type.raw.psi.Rd
man/getCoordinatedNodes.Rd
man/getRawPsi.Rd
man/get_lower_tri.Rd
man/get_upper_tri.Rd
man/hyperQueryCellTypes.Rd
man/loadObject.Rd
man/markerNodes.Rd
man/mergeDataset.Rd
man/mergeIndices.Rd
man/nodeDetails.Rd
man/plotRawPsiCorr.Rd
man/plotRawPsiHeatmap.Rd
man/reorder_cormat.Rd
man/saveObject.Rd
man/scfindNodes.Rd
plots/MXE_in_human_Hatje_et.al_2017.csv
plots/Ogdh_ME_PSI.pdf
plots/Tasic_ME_PSI.pdf
plots/Tasic_ME_PSI_all.pdf
plots/VASA-seq_ME_PSI.pdf
plots/markers.pdf
scripts/build_matrix_original.R
scripts/build_matrix_original_new.R
scripts/find_mutually_exclusive.R
scripts/find_node_blocks.R
src/.gitignore
src/EliasFano.h
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/Serialization.h
src/code.cpp
src/eliasFano.cpp
src/fp_growth.cpp
src/fp_growth.h
src/functions.cpp
src/functions.h
src/scfind_types.h
src/serialization.cpp
vignettes/.gitignore
vignettes/example_workflow.ipynb
