dot-CNV_all_cancer: Calculates the frequency of CNV status in all TCGA cancer...
In a3609640/eIF4F.analysis: A R package to analyze eIF4F subunits in human cancers
.CNV_all_cancer R Documentation
Calculates the frequency of CNV status in all TCGA cancer types combined
Description
This function calculates the frequency of each CNV status
across tumors in all TCGA cancer types for every EIF4F gene.
Usage
.CNV_all_cancer(df)
Arguments
df
.TCGA_CNV_sampletype_subset generated inside
.plot_bargraph_CNV_TCGA()
Details
It should not be used directly, only inside
.plot_bargraph_CNV_TCGA() function.
Value
a summary table ranking the EIF4F gene by the frequencies of
duplication (CNV threshold labeled as “1” in the dataset)
See Also
Other helper function for CNV data analysis:
.CNV_ind_cancer(),
.CNVratio_tumor()
Examples
## Not run:
.CNV_all_cancer(.TCGA_CNV_sampletype_subset)
## End(Not run)
a3609640/eIF4F.analysis documentation built on Jan. 2, 2023, 11:19 p.m.
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| .CNV_all_cancer | R Documentation |
Calculates the frequency of CNV status in all TCGA cancer types combined
Description
This function calculates the frequency of each CNV status across tumors in all TCGA cancer types for every EIF4F gene.
Usage
.CNV_all_cancer(df)
Arguments
df |
|
Details
It should not be used directly, only inside
.plot_bargraph_CNV_TCGA() function.
Value
a summary table ranking the EIF4F gene by the frequencies of duplication (CNV threshold labeled as “1” in the dataset)
See Also
Other helper function for CNV data analysis:
.CNV_ind_cancer(),
.CNVratio_tumor()
Examples
## Not run: .CNV_all_cancer(.TCGA_CNV_sampletype_subset) ## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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