dot-get_TCGA_CNV_value: Read CNV value dataset from TCGA

In a3609640/eIF4F.analysis: A R package to analyze eIF4F subunits in human cancers

Read CNV value dataset from TCGA

Description

This function reads the unthreshold CNV value data from TCGA Gistic2_CopyNumber_Gistic2_all_data_by_genes.

Usage

.get_TCGA_CNV_value()

Details

The function also removes possible duplicated tumor samples and samples with NAs in the dataset.

It should not be used directly, only inside initialize_cnv_data() function.

Value

a data frame that contains CNV value data for each tumor

See Also

Other helper function for data initialization: .get_TCGA_CNV_ratio(), .get_TCGA_CNV(), .get_TCGA_GTEX_RNAseq(), .get_TCGA_RNAseq()

Examples

## Not run: 
.get_TCGA_CNV_value()

## End(Not run)

a3609640/eIF4F.analysis documentation built on Jan. 2, 2023, 11:19 p.m.