dot-CNV_ind_cancer: Calculates the frequency of CNV status in individual TCGA...

In a3609640/eIF4F.analysis: A R package to analyze eIF4F subunits in human cancers

Calculates the frequency of CNV status in individual TCGA cancer types

Description

a data analysis function that calculates the frequency of CNV status for each EIF4F gene in individual TCGA cancer types.

Usage

.CNV_ind_cancer(df, gene)

Arguments

df	.TCGA_CNV_sampletype_subset generated inside .plot_bargraph_CNV_TCGA()
gene	one gene from the input argument of .plot_bargraph_CNV_TCGA()

Details

It should not be used directly, only inside .plot_bargraph_CNV_TCGA() function.

Value

a list with the summary table of CNV in individual TCGA cancer types and gene name

See Also

Other helper function for CNV data analysis: .CNV_all_cancer(), .CNVratio_tumor()

Examples

## Not run: 
lapply(EIF, .CNV_ind_cancer, df = .TCGA_CNV_sampletype_subset)

## End(Not run)

a3609640/eIF4F.analysis documentation built on Jan. 2, 2023, 11:19 p.m.