dot-CORs_vennplot: Plot Venn diagrams for correlating genes

In a3609640/eIF4F.analysis: A R package to analyze eIF4F subunits in human cancers

Plot Venn diagrams for correlating genes

Description

This function draw Venn diagrams, using the correlation data generated from .EIF_correlation().

It should not be used directly, only inside .plot_Corr_RNAseq_TCGA_GTEX() function.

Side effects:

(1) Venn diagrams on screen and as pdf file to show the overlap of EIF correlating genes

Usage

.CORs_vennplot(df, tissue_type, sample_type, CORs_type)

Arguments

df	correlation data
tissue_type	input argument of .plot_Corr_RNAseq_TCGA_GTEX()
sample_type	tumor or normal for the title of Venn diagram
CORs_type	posCOR or negCORs for the title of Venn diagram

See Also

Other helper function for correlation analysis plotting: .CORs_coeff_heatmap(), .CORs_summary_bargraph(), .pathway_dotplot()

Examples

## Not run: 
.CORs_vennplot(
df = EIF.cor.tumor[[3]],
tissue_type = tissue_type,
sample_type = "tumor",
CORs_type = "posCOR")

## End(Not run)

a3609640/eIF4F.analysis documentation built on Jan. 2, 2023, 11:19 p.m.