dot-plot_scatter_RNApro_LUAD: Correlation between LUAD RNAseq and proteomics data

In a3609640/eIF4F.analysis: A R package to analyze eIF4F subunits in human cancers

Correlation between LUAD RNAseq and proteomics data

Description

A composite function generates correlation scatter plot for eIF4F RNAseq and proteomics data from LUAD.

Usage

.plot_scatter_RNApro_LUAD(gene_name)

Arguments

gene_name

gene name

Details

This function

• merges the LUAD RNAseq data of EIF4F genes prepared from CPTAC_LUAD_Proteomics and proteomics data of the EIF4F proteins prepared from CPTAC_LUAD_RNAseq.

• uses the combined data to calculate the correlation coefficients between protein and RNA levels, and plot the result with the function .RNApro_scatterplot()

This function is not accessible to the user and will not show at the users' workspace. It can only be called by the exported EIF4F_RNA_pro_correlation() function.

Side effects:

(1) scatter plot to show correlation between RNA and protein expressions of input gene_name in CPTAC LUAD samples

See Also

Other composite function to call RNA protein correlation analysis and plotting: .plot_scatter_RNApro_CCLE()

Examples

## Not run: 
lapply(c("EIF4G1", "EIF4A1", "EIF4E"), .plot_scatter_RNApro_LUAD)

## End(Not run)

a3609640/eIF4F.analysis documentation built on Jan. 2, 2023, 11:19 p.m.