dot-CNVratio_boxplot: Box plots of the CNV ratios in tumors vs adjacent normals

In a3609640/eIF4F.analysis: A R package to analyze eIF4F subunits in human cancers

Box plots of the CNV ratios in tumors vs adjacent normals

Description

This function generates boxplot for CNV ratios in tumors vs adjacent normals from individual TCGA cancer types.

Usage

.CNVratio_boxplot(df)

Arguments

df	.EIF_CNVratio_ind_cancer generated inside .plot_boxgraph_CNVratio_TCGA()

Details

This plot function uses dataset .TCGA_CNVratio_sampletype_subset generated from .plot_boxgraph_CNVratio_TCGA() function. It should not be used directly, only inside .plot_boxgraph_CNVratio_TCGA() function.

Side effects:

(1) boxplot on screen and as saved pdf files to show CNV ratios in tumors vs adjacent normals from individual TCGA cancer types.

See Also

Other helper function for CNV data plotting: .CNV_barplot(), .CNV_sum_barplot(), .matrix_plot()

Examples

## Not run: 
lapply(.EIF_CNVratio_ind_cancer, .CNVratio_boxplot)

## End(Not run)

a3609640/eIF4F.analysis documentation built on Jan. 2, 2023, 11:19 p.m.