dot-get_TCGA_RNAseq: Read the RNAseq data from TCGA
In a3609640/eIF4F.analysis: A R package to analyze eIF4F subunits in human cancers
.get_TCGA_RNAseq R Documentation
Read the RNAseq data from TCGA
Description
A helper function reads the RNAseq data from TCGA
EB++AdjustPANCAN_IlluminaHiSeq_RNASeqV2.geneExp.xena.
Usage
.get_TCGA_RNAseq()
Details
This function removes possible duplicated tumor samples and samples with
NAs in the dataset.
It should not be used directly, only inside initialize_survival_data()
function.
Value
a data frame that contains the RNAseq data from TCGA
See Also
Other helper function for data initialization:
.get_TCGA_CNV_ratio(),
.get_TCGA_CNV_value(),
.get_TCGA_CNV(),
.get_TCGA_GTEX_RNAseq()
Examples
## Not run:
.get_TCGA_RNAseq()
## End(Not run)
a3609640/eIF4F.analysis documentation built on Jan. 2, 2023, 11:19 p.m.
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| .get_TCGA_RNAseq | R Documentation |
Read the RNAseq data from TCGA
Description
A helper function reads the RNAseq data from TCGA
EB++AdjustPANCAN_IlluminaHiSeq_RNASeqV2.geneExp.xena.
Usage
.get_TCGA_RNAseq()
Details
This function removes possible duplicated tumor samples and samples with
NAs in the dataset.
It should not be used directly, only inside initialize_survival_data()
function.
Value
a data frame that contains the RNAseq data from TCGA
See Also
Other helper function for data initialization:
.get_TCGA_CNV_ratio(),
.get_TCGA_CNV_value(),
.get_TCGA_CNV(),
.get_TCGA_GTEX_RNAseq()
Examples
## Not run: .get_TCGA_RNAseq() ## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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