dot-plot_scatter_RNApro_CCLE: Correlation between CCLE RNAseq and proteomics data

In a3609640/eIF4F.analysis: A R package to analyze eIF4F subunits in human cancers

Correlation between CCLE RNAseq and proteomics data

Description

An internal composite function generates correlation scatter plot for eIF4F RNAseq and proteomics data from CCLE.

Usage

.plot_scatter_RNApro_CCLE(gene_name)

Arguments

gene_name

gene name

Details

This function

• merges the CCLE RNAseq values of EIF4F genes in the data frame prepared from .get_CCLE_RNAseq_subset(), the annotation data of CCLE CCLE_Anno, and proteomics data of the same EIF4F protein in the data frame prepared from .get_CCLE_Proteomics_subset().

• uses the combined data to calculate the correlation coefficients between protein and RNA levels, and plot the result with the function .RNApro_scatterplot()

This function is not accessible to the user and will not show at the users' workspace. It can only be called by the exported EIF4F_RNA_pro_correlation() function.

Side effects:

(1) scatter plot to show correlation between RNA and protein of input gene_name expressions in CCLE samples

See Also

Other composite function to call RNA protein correlation analysis and plotting: .plot_scatter_RNApro_LUAD()

Examples

## Not run: 
lapply(c("EIF4G1", "EIF4A1", "EIF4E"), .plot_scatter_RNApro_CCLE)

## End(Not run)

a3609640/eIF4F.analysis documentation built on Jan. 2, 2023, 11:19 p.m.