dot-CORs_summary_bargraph: Plot bargraph for the numbers of correlating genes

In a3609640/eIF4F.analysis: A R package to analyze eIF4F subunits in human cancers

Plot bargraph for the numbers of correlating genes

Description

This function draw bargraph, using the correlation data generated from .EIF_correlation().

It should not be used directly, only inside .plot_Corr_RNAseq_TCGA_GTEX() function.

Side effects:

(1) bar graphs on screen and as pdf file to show the numbers of identified correlating genes for each EIF4F subunit

Usage

.CORs_summary_bargraph(df, tissue_type, CORs_type, coord_flip.ylim)

Arguments

df	combined CORs summary table
tissue_type	input argument of .plot_Corr_RNAseq_TCGA_GTEX()
CORs_type	posCORs or negCORs for the title of Venn diagram
coord_flip.ylim	the limit of y axis in the bar plot

Value

bargraph for the numbers of posCOR or negCORs

See Also

Other helper function for correlation analysis plotting: .CORs_coeff_heatmap(), .CORs_vennplot(), .pathway_dotplot()

Examples

## Not run: 
.CORs_summary_bargraph(
 df = EIF.cor,
 tissue_type = tissue_type,
 CORs_type = "posCORs",
 coord_flip.ylim = 14000)

## End(Not run)

a3609640/eIF4F.analysis documentation built on Jan. 2, 2023, 11:19 p.m.