dot-get_TCGA_GTEX_RNAseq: Read recomputed RNAseq data from both TCGA and GTEx

In a3609640/eIF4F.analysis: A R package to analyze eIF4F subunits in human cancers

Read recomputed RNAseq data from both TCGA and GTEx

Description

A helper function reads the dataset TcgaTargetGtex_RSEM_Hugo_norm_count, which contains the recomputed RNAseq data from both TCGA and GTEx.

Usage

.get_TCGA_GTEX_RNAseq()

Details

The function also removes possible duplicated tumor samples and samples with NAs in the dataset. It should not be used directly, only inside initialize_RNAseq_data() function.

Value

a data frame that contains the recomputed RNAseq data from both TCGA and GTEx

See Also

Other helper function for data initialization: .get_TCGA_CNV_ratio(), .get_TCGA_CNV_value(), .get_TCGA_CNV(), .get_TCGA_RNAseq()

Examples

## Not run: 
.get_TCGA_GTEX_RNAseq()

## End(Not run)

a3609640/eIF4F.analysis documentation built on Jan. 2, 2023, 11:19 p.m.