dot-get_df_subset: Select RNAseq data based on the sample types

In a3609640/eIF4F.analysis: A R package to analyze eIF4F subunits in human cancers

Select RNAseq data based on the sample types

Description

A helper function selects the RNAseq data of primary tumors (TCGA), metastatic tumors (TCGA), healthy tissues (GTEX) or all sample types combined (all), from dataframe .TCGA_GTEX_sampletype_subset.

It should not be used directly, only inside .plot_PCA_TCGA_GTEX() or .plot_PCA_TCGA_GTEX_tumor() function.

Usage

.get_df_subset(df, sample_type)

Arguments

df	.TCGA_GTEX_sampletype_subset generated inside .plot_PCA_TCGA_GTEX()
sample.type	selected sample types

Value

a subset dataframe from .TCGA_GTEX_sampletype_subset for indicate sample types

Examples

## Not run: 
.get_df_subset(.TCGA_GTEX_sampletype_subset, "Primary Tumor (TCGA)")

## End(Not run)

a3609640/eIF4F.analysis documentation built on Jan. 2, 2023, 11:19 p.m.