dot-pathway_dotplot: Plot the enriched pathways from gene lists

In a3609640/eIF4F.analysis: A R package to analyze eIF4F subunits in human cancers

Plot the enriched pathways from gene lists

Description

This function plots pathway enrichment analysis results of the gene from each cluster in heatmap generated from .get_cluster_genes().

It should not be used directly, only inside .plot_Corr_RNAseq_TCGA_GTEX() function.

Side effects:

(1) dotplot on screen and as pdf file to show the enriched pathways in the genes from different clusters in the heatmap

Usage

.pathway_dotplot(df, pathway, tissue_type)

Arguments

df	pathway enrichment analysis results generated from .plot_Corr_RNAseq_TCGA_GTEX()
pathway	pathway name, "GO", ""REACTOME", "KEGG"
tissue_type	tissue type, the same argument of .plot_Corr_RNAseq_TCGA_GTEX()

See Also

Other helper function for correlation analysis plotting: .CORs_coeff_heatmap(), .CORs_summary_bargraph(), .CORs_vennplot()

Examples

## Not run: 
.pathway_dotplot(df = ck.REACTOME, pathway = "REACTOME",
 tissue_type = tissue_type)

## End(Not run)

a3609640/eIF4F.analysis documentation built on Jan. 2, 2023, 11:19 p.m.