dot-CNVratio_tumor: Calculates the frequency of CNV status in all TCGA cancer...

In a3609640/eIF4F.analysis: A R package to analyze eIF4F subunits in human cancers

Calculates the frequency of CNV status in all TCGA cancer types combined

Description

This function selects the CNV ratio data in tumors vs adjacent normals from individual TCGA cancer types for each input gene.

Usage

.CNVratio_tumor(df, gene)

Arguments

df	.TCGA_CNVratio_sampletype_subset generated inside .plot_boxgraph_CNVratio_TCGA()
gene	one gene from the input argument of .plot_boxgraph_CNVratio_TCGA()

Details

It should not be used directly, only inside .plot_boxgraph_CNVratio_TCGA() function.

Value

a list with the data frame of CNV ratio of the input gene in individual TCGA cancer types and gene name

See Also

Other helper function for CNV data analysis: .CNV_all_cancer(), .CNV_ind_cancer()

Examples

## Not run: 
lapply(EIF, .CNVratio_tumor, df = .TCGA_CNVratio_sampletype_subset)

## End(Not run)

a3609640/eIF4F.analysis documentation built on Jan. 2, 2023, 11:19 p.m.