API for beyondpie/smmtools
Single-cell multi-omics sequenceing data tools
| Global functions | |
|---|---|
| ArchRPalettes | Man page |
| SnapATACPalette | Man page |
| SnapATAC_BinarizeBmat | Man page Source code |
| SnapATAC_DiffusionMaps | Man page Source code |
| SnapATAC_runDiffusionMaps | Man page Source code |
| SnapATAC_runDiffusionMapsExtension | Man page Source code |
| SnapATAC_runHarmony | Man page Source code |
| SnapATAC_runScrublet | Man page Source code |
| cal_ovlpScore | Source code |
| cleanOutfile | Man page Source code |
| eig_decomp | Man page Source code |
| fastGetTSSEnrichmentSingleThread | Man page Source code |
| fastH5Read | Man page Source code |
| filterChrGR | Man page Source code |
| getAnnotFromArchRData | Man page Source code |
| getBlacklist | Man page Source code |
| getBmatFromSnap | Man page |
| getFragSize | Source code |
| getFragsOfAChrFromRawH5File | Man page Source code |
| getGeneMatrix | Man page Source code |
| getGmatFromSnap | Man page Source code |
| getIndex | Man page Source code |
| getNfragmentPerBarcode | Man page Source code |
| getNormOVE | Man page Source code |
| getOverlapMatrix | Source code |
| getPredictId | Source code |
| getScrubletThresholdByMixEM | Man page Source code |
| getTSSFromTxDb | Man page Source code |
| getTileMatrix | Man page Source code |
| getiFromSparseMatrix | Man page Source code |
| getjFromSparseMatrix | Man page Source code |
| getvalFromSparseMatrix | Man page Source code |
| ggPoint | Man page Source code |
| installGenomeRelatedDatabase | Man page Source code |
| integrateWithScRNASeq | Source code |
| loadBmatFromFile | Man page |
| loadGeneMatrix | Man page Source code |
| loadSnapATACGmatFromFile | Man page Source code |
| loadSparseMatrixFromMatTextFile | Man page Source code |
| loadTileMatrix | Man page |
| paletteContinuous | Man page Source code |
| paletteDiscrete | Man page Source code |
| plotDimReductElbow | Man page Source code |
| plotDimReductPairwise | Man page Source code |
| plot_scATAC_cnv | Man page Source code |
| readColumnsFromTextFile | Man page Source code |
| removeSampleName | Man page Source code |
| runJaccard2 | Man page Source code |
| runKNN | Man page Source code |
| runLeiden | Man page Source code |
| runUMAP | Man page Source code |
| sampleBasedOnDepth | Man page Source code |
| sampleBasedOnDepth2 | Man page Source code |
| simplifyGRSeqnames | Man page Source code |
| snapGmat2Seurat | Man page Source code |
| subsetGeneAnnoByGenomeAnno | Man page Source code |
| subsetSeqnamesGR | Man page Source code |
| sumFragmentSingleThread | Man page Source code |
| suppressAll | Man page Source code |
| t.sparseMatrix | Man page Source code |
| tabixToH5SingleThread | Man page Source code |
| tabulate2dCpp | Source code |
| theme_ArchR | Man page |
| tileChrom | Man page Source code |
