get_subset_picrust_ko_table: Returns the melted picrust ko table corresponding to the...

In borenstein-lab/mimosa2: Model-based Integration of Metabolite Observations and Species Abundances

Returns the melted picrust ko table corresponding to the given set of OTUs

Description

Returns the melted picrust ko table corresponding to the given set of OTUs

Usage

get_subset_picrust_ko_table(
  otus,
  picrust_ko_table_directory,
  picrust_ko_table_suffix
)

Arguments

otus	List of OTUs to find genomic content for
picrust_ko_table_directory	Directory of PICRUSt genome OTU predictions
picrust_ko_table_suffix	File naming of PICRUSt genome OTU predictions

Value

Genomic content for list of OTUs

Examples

get_subset_picrust_ko_table(otus, picrust_dir, picrust_suffix)

borenstein-lab/mimosa2 documentation built on Dec. 19, 2024, 12:44 a.m.