get_summary_stats: Calculate basic statistics summarizing MIMOSA results
In borenstein-lab/mimosa2: Model-based Integration of Metabolite Observations and Species Abundances
View source: R/postProcessing.R
get_summary_stats R Documentation
Calculate basic statistics summarizing MIMOSA results
Description
Calculate basic statistics summarizing MIMOSA results
Usage
get_summary_stats(node_data, threshold_class = "low")
Arguments
node_data
Processed table of core MIMOSA results
threshold_class
Whether to use the more or less strict significance threshold for counting metabolite outcomes (default less strict)
Value
List of counts describing 1) total metabolites analyzed, 2) number consistent, 3) percent consistent, 4) number contrasting, 5) percent contrasting
get_summary_stats(node_data)
borenstein-lab/mimosa2 documentation built on Dec. 19, 2024, 12:44 a.m.
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View source: R/postProcessing.R
| get_summary_stats | R Documentation |
Calculate basic statistics summarizing MIMOSA results
Description
Calculate basic statistics summarizing MIMOSA results
Usage
get_summary_stats(node_data, threshold_class = "low")
Arguments
node_data |
Processed table of core MIMOSA results |
threshold_class |
Whether to use the more or less strict significance threshold for counting metabolite outcomes (default less strict) |
Value
List of counts describing 1) total metabolites analyzed, 2) number consistent, 3) percent consistent, 4) number contrasting, 5) percent contrasting get_summary_stats(node_data)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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