humann2_format_contributions: Function for reformatting a Humann2 stratified KO abundance...
In borenstein-lab/mimosa2: Model-based Integration of Metabolite Observations and Species Abundances
View source: R/misc_helper_functions.R
humann2_format_contributions R Documentation
Function for reformatting a Humann2 stratified KO abundance table into a picrust-format table
Description
Function for reformatting a Humann2 stratified KO abundance table into a picrust-format table
Usage
humann2_format_contributions(path_to_humann_file, file_read = F)
Arguments
path_to_humann_file
File path to humann2 stratified KO abundance table.
Value
data.table formatted in the style of a PICRUSt species contribution table compatible with MIMOSA
Examples
kos_from_species(bv_qpcr, genome_content)
borenstein-lab/mimosa2 documentation built on Dec. 19, 2024, 12:44 a.m.
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View source: R/misc_helper_functions.R
| humann2_format_contributions | R Documentation |
Function for reformatting a Humann2 stratified KO abundance table into a picrust-format table
Description
Function for reformatting a Humann2 stratified KO abundance table into a picrust-format table
Usage
humann2_format_contributions(path_to_humann_file, file_read = F)
Arguments
path_to_humann_file |
File path to humann2 stratified KO abundance table. |
Value
data.table formatted in the style of a PICRUSt species contribution table compatible with MIMOSA
Examples
kos_from_species(bv_qpcr, genome_content)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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