make_contrib_network: Convert edge list and node list to class network object for...

In borenstein-lab/mimosa2: Model-based Integration of Metabolite Observations and Species Abundances

Convert edge list and node list to class network object for plotting with ggnetwork

Description

Convert edge list and node list to class network object for plotting with ggnetwork

Usage

make_contrib_network(gene_contribs, node_data, node_attrs, edge_attrs)

Arguments

gene_contribs	output of gene_contributions
node_data	output of run_all_metabolites
node_attrs	vector of node attributes to include in network
edge_attrs	vector of edge attributes to include in network

Value

network object

Examples

make_contrib_network(gene_contribs_all, node_data, c("Dataset", "Correlation", "Metabolite", "PredictionType2", "SuperPath"), c("KO", "Cor", "Dataset", "stoichReac", "stoichProd"))

borenstein-lab/mimosa2 documentation built on Dec. 19, 2024, 12:44 a.m.