make_gene_species_contributor_table: Make table of species-specific gene and reaction contributors...
In borenstein-lab/mimosa2: Model-based Integration of Metabolite Observations and Species Abundances
View source: R/postProcessing.R
make_gene_species_contributor_table R Documentation
Make table of species-specific gene and reaction contributors identified by MIMOSA
Description
Make table of species-specific gene and reaction contributors identified by MIMOSA
Usage
make_gene_species_contributor_table(geneContribs, species_ref, node_data_spec)
Arguments
geneContribs
Table from MIMOSA gene/rxn contributor analysis ("_geneContribAnalysis.txt")
species_ref
Table of genome content as produced by PICRUSt
node_data_spec
Table of core metabolite results and their species contributors
Value
Table of species-specific reaction contributors and overall MIMOSA results for each analyzed metabolite
make_gene_species_contributor_table(gene_contribs, species_ref, node_data_species)
borenstein-lab/mimosa2 documentation built on Dec. 19, 2024, 12:44 a.m.
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View source: R/postProcessing.R
| make_gene_species_contributor_table | R Documentation |
Make table of species-specific gene and reaction contributors identified by MIMOSA
Description
Make table of species-specific gene and reaction contributors identified by MIMOSA
Usage
make_gene_species_contributor_table(geneContribs, species_ref, node_data_spec)
Arguments
geneContribs |
Table from MIMOSA gene/rxn contributor analysis ("_geneContribAnalysis.txt") |
species_ref |
Table of genome content as produced by PICRUSt |
node_data_spec |
Table of core metabolite results and their species contributors |
Value
Table of species-specific reaction contributors and overall MIMOSA results for each analyzed metabolite make_gene_species_contributor_table(gene_contribs, species_ref, node_data_species)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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