plot_metabolite_counts: Make bar plot of MIMOSA outcome counts in different...

In borenstein-lab/mimosa2: Model-based Integration of Metabolite Observations and Species Abundances

Make bar plot of MIMOSA outcome counts in different metabolite categories

Description

Make bar plot of MIMOSA outcome counts in different metabolite categories

Usage

plot_metabolite_counts(
  node_data,
  variable,
  threshold = "low",
  prediction_colors = c("#1B9E77", "lightgrey", "#F46D43")
)

Arguments

node_data	Processed core MIMOSA results table
variable	Grouping variable for metabolites (must be a column name in node_data)
threshold	Whether to use the lower or higher significance threshold
prediction_colors	List of 3 colors to use as color scheme for Consistent, Contrasting, & Inconsistent metabolites

Value

plot object of MIMOSA outcome counts across specified metabolite categories plot_metabolite_counts(node_data, "Category")

borenstein-lab/mimosa2 documentation built on Dec. 19, 2024, 12:44 a.m.