process_metabolite_summary: Add summary columns to metabolite 'node' file of MIMOSA...
In borenstein-lab/mimosa2: Model-based Integration of Metabolite Observations and Species Abundances
View source: R/postProcessing.R
process_metabolite_summary R Documentation
Add summary columns to metabolite 'node' file of MIMOSA results
Description
Add summary columns to metabolite 'node' file of MIMOSA results
Usage
process_metabolite_summary(node_data, thresholds, ko_summary)
Arguments
node_data
Table from "_nodes.txt" file produced by runMimosa.R
thresholds
Significance thresholds (q-value and p-value) to be used for classifying metabolites as consistent or contrasting. By default this function classifies based on 2 different thresholds
ko_summary
Table of gene contributor information produced by MIMOSA (geneContribCompoundSummary.txt))
path_key
Table of metabolite categories
Value
Processed table of merged results for each metabolite
process_metabolite_summary(node_data, list(c(0.01, 0.01), c(0.1, 0.1)))
borenstein-lab/mimosa2 documentation built on Dec. 19, 2024, 12:44 a.m.
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View source: R/postProcessing.R
| process_metabolite_summary | R Documentation |
Add summary columns to metabolite 'node' file of MIMOSA results
Description
Add summary columns to metabolite 'node' file of MIMOSA results
Usage
process_metabolite_summary(node_data, thresholds, ko_summary)
Arguments
node_data |
Table from "_nodes.txt" file produced by runMimosa.R |
thresholds |
Significance thresholds (q-value and p-value) to be used for classifying metabolites as consistent or contrasting. By default this function classifies based on 2 different thresholds |
ko_summary |
Table of gene contributor information produced by MIMOSA (geneContribCompoundSummary.txt)) |
path_key |
Table of metabolite categories |
Value
Processed table of merged results for each metabolite process_metabolite_summary(node_data, list(c(0.01, 0.01), c(0.1, 0.1)))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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