run_mimosa2: Run a MIMOSA 2 analysis

In borenstein-lab/mimosa2: Model-based Integration of Metabolite Observations and Species Abundances

Run a MIMOSA 2 analysis

Description

Run a MIMOSA 2 analysis

Usage

run_mimosa2(
  config_table,
  species = "",
  mets = "",
  make_plots = F,
  save_plots = F,
  plot_dir = "mimosa2plots"
)

Arguments

config_table	Data.table of input files and settings for MIMOSA analysis OR path to such a table
species	Optionally provide already-read-in species data
mets	Optionally provide already-read-in metabolite data
make_plots	Whether to generate plots for each metabolite and extended output (as provided via the web server)
save_plots	Whether to save plots to files
plot_dir	Path for saving plots

Value

Scaling model and variance contribution results

Examples

run_mimosa2(config_table, species, mets)

borenstein-lab/mimosa2 documentation built on Dec. 19, 2024, 12:44 a.m.